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Table 1 Comparison of performance between SPPIDER and our SH

From: Sequence specificity between interacting and non-interacting homologs identifies interface residues – a homodimer and monomer use case

 

Size

SPPIDER

SH

Prec

Recall

Prec

Recall

Complete set1 : <100 % ID (Test-set 1)

1592

1)

22.3 %

41.7 %

Complete set2 : <100 % ID (Test-set 2)

40

24.8 %

8.9 %

22.8 %

41.3 %

Selected Test-set 1: 200HSP +400length

52

24.9 %

6.9 %

25.1 %

40.9 %

Selected Test-set 2 : 200HSP +400length

1

2)

23.1 %

50.5 %

  1. Table 1 Four datasets: The full set at 100 % ID and a selected set by using minimal HSP-length 200 and sequence length 400. Higher Precision and Recall for each dataset in bold. 1) SPPIDER not run 2) Only one protein family and SPPIDER gave no correct prediction
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BMC Bioinformatics

ISSN: 1471-2105

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