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Table 4 Distribution of DNA binding site data sources

From: An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system

Data source

Fraction of DNA binding sites

TRANSFAC

39.39 %

PRODORIC

22.41 %

RedFly/FlyReg

18.22 %

Fly SELEX

17.79 %

Original literature

14.13 %

JASPAR

12.04 %

HTP SELEX

4.19 %

RegTransBase

2.90 %

DBTBS

2.19 %

RegulonDB

1.05 %

DPInteract

0.71 %

  1. Percentages do not add up to 100 because some sites occur in multiple databases
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BMC Bioinformatics

ISSN: 1471-2105

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