Mapping tool | DE tool | DE Genes, Q40 | DE Genes, Q40 L36 |
---|
TopHat2 | Cuffdiff2 | 1829 | 150 |
TopHat2/HTSeq | DESeq | 289 | 2 |
STAR | DESeq | 812 | 2 |
RSEM/STAR | DESeq | 79 | 53 |
STAR | EdgeR | 321 | 0 |
- The number of significantly differentially expressed genes detected, using 5 different analysis pipelines, when comparing the untrimmed data set to the same data set trimmed with SolexaQA, using a quality score of 40 (Q40), or with a quality score of 40 and a minimum length requirement of 36 bases (Q40 L36). DE Tool, differential expression tool. DE Genes, differentially expressed genes