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Table 3 Area under the ROC curve values for different input settings

From: Identifying peaks in *-seq data using shape information

Experiment ChIP

Control ChIP

MAX

NRSF

SRF

Rep. 1 and Rep. 2

Rep. 1 and Rep. 2 a

0.94

0.98

0.97

Merged

Merged a

0.93

0.98

0.97

Rep. 1

Rep. 1

0.93

0.99

0.96

Rep. 2

Rep. 2 a

0.95

0.97

0.97

Rep. 1 and Rep. 2

none

0.92

0.95

0.95

Merged

none

0.93

0.94

0.94

Rep. 1

none

0.90

0.95

0.94

Rep. 2

none

0.94

0.94

0.95

  1. aFor MAX the only available control replicate Rep. 1 was used as input (see Table 1)
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BMC Bioinformatics

ISSN: 1471-2105

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