Table 1 Statistics for the most abundant clades. The information for all 131 abundant clades is provided in Additional file 1: Table S1
From: Clustering analysis of proteins from microbial genomes at multiple levels of resolution
Clade | Taxonomic content | No. annotated | No. nonclonal | No. protein | No. protein | No. conservative |
|---|---|---|---|---|---|---|
Id | Â | genomes | annotated genomes | coding regions | sequences | inclade clusters |
19668 | Escherichia, Shigella | 2277 | 929 | 3303114 | 310023 | 3894 |
19507 | Acinetobacter | 749 | 280 | 774670 | 133653 | 3034 |
19252 | Helicobacter pylori | 309 | 216 | 254806 | 191419 | 1244 |
20139 | Enterococcus genus | 242 | 155 | 306721 | 33249 | 2106 |
20104 | Streptococcus genus | 347 | 139 | 163066 | 61589 | 1394 |
20137 | Enterococcus genus | 300 | 139 | 309061 | 45809 | 2314 |
19669 | Salmonella, Citrobacter | 638 | 134 | 478093 | 112833 | 3940 |
19672 | Enterobacter, Escherichia, Klebsiella | 350 | 132 | 593750 | 84168 | 4726 |
19537 | Pseudomonas | 229 | 118 | 622138 | 100992 | 5511 |
21194 | Vibrio | 271 | 118 | 433416 | 150390 | 4015 |
19400 | Neisseria genus | 204 | 109 | 162808 | 29688 | 1596 |
19988 | Staphylococcus aureus | 3827 | 108 | 235562 | 43260 | 2309 |
20122 | Streptococcus agalactiae | 285 | 103 | 165898 | 17943 | 1704 |
19671 | Enterobacter Lelliottia | 80 | 70 | 229896 | 102783 | 3476 |
20021 | Bacillus | 101 | 70 | 250224 | 101171 | 3919 |
20103 | Streptococcus suis | 92 | 69 | 97200 | 48055 | 1541 |
19543 | Pseudomonas | 108 | 68 | 219354 | 114229 | 3551 |
19270 | Campylobacter jejuni | 97 | 63 | 85618 | 29112 | 1444 |
20116 | Streptococcus mutans | 165 | 62 | 100740 | 28671 | 1672 |
19993 | Staphylococcus genus | 92 | 59 | 114655 | 23197 | 2014 |