CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data

Table 1 Comparison of single-cell gene expression ordering tools, using mouse embryo data

Tool	Naive	Monocle	TSCAN	cellTree
Method	TSP	ICA	PCA	LDA
Input size after thresholding	20,214	10,452	225	12,903
Accuracy in %	90.6	94.8	95.3	96.5
CPU time in seconds	0.015	5308.6	0.08	18.5

ISSN: 1471-2105