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Table 5 List of cellular components GO terms significantly enriched and uniquely appearing in each topic for embryonic mouse cell differentiation

From: CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data

GO.ID

Term

p-Value

Topic 1

GO:0033178

proton-transporting two-sector ATPase complex, catalytic domain

7.8e-07

GO:0031597

cytosolic proteasome complex

2.0e-06

GO:0005680

anaphase-promoting complex

2.5e-06

GO:0008540

proteasome regulatory particle, base subcomplex

3.7e-06

Topic 2

GO:0005736

DNA-directed RNA polymerase I complex

4.8e-07

GO:0005665

DNA-directed RNA polymerase II, core complex

5.0e-07

GO:0005844

polysome

1.2e-06

GO:0005689

U12-type spliceosomal complex

1.8e-06

GO:0005838

proteasome regulatory particle

3.1e-06

GO:0008023

transcription elongation factor complex

8.1e-06

GO:0000346

transcription export complex

9.5e-06

GO:0015030

Cajal body

1.5e-05

Topic 3

GO:0005813

centrosome

4.1e-08

GO:0000932

cytoplasmic mRNA processing body

3.1e-06

GO:0016592

mediator complex

6.2e-06

Topic 4

GO:0072562

blood microparticle

7.4e-29

GO:0005783

endoplasmic reticulum

9.3e-27

GO:0005615

extracellular space

2.5e-25

GO:0005743

mitochondrial inner membrane

3.7e-22

GO:0005829

cytosol

2.2e-17

GO:0005759

mitochondrial matrix

2.0e-11

GO:0016021

integral component of membrane

3.2e-10

GO:0034364

high-density lipoprotein particle

3.7e-09

GO:0031012

extracellular matrix

4.1e-09

GO:0030176

integral component of endoplasmic reticulum membrane

4.2e-09

GO:0005777

peroxisome

3.3e-08

GO:0005789

endoplasmic reticulum membrane

5.4e-08

GO:0005788

endoplasmic reticulum lumen

6.5e-08

GO:0034361

very-low-density lipoprotein particle

1.3e-07

GO:0005764

lysosome

1.4e-07

GO:0005791

rough endoplasmic reticulum

3.6e-07

GO:0005778

peroxisomal membrane

1.2e-06

GO:0005793

endoplasmic reticulum-Golgi intermediate compartment

1.3e-06

GO:0070069

cytochrome complex

3.8e-06

GO:0009986

cell surface

5.1e-06

GO:0030867

rough endoplasmic reticulum membrane

8.9e-06

GO:0005782

peroxisomal matrix

9.8e-06

GO:0009897

external side of plasma membrane

1.0e-05

GO:0005790

smooth endoplasmic reticulum

1.1e-05

GO:0005765

lysosomal membrane

1.1e-05