Table 4 Analysis of the Rfam 12.0 database
MEASURE | GC 5 % | Exact GC | No GC | WT |
|---|---|---|---|---|
BP DIST TARGET | 0.1 ±0.05 | 0.1 ±0.05 | 0.16 ±0.07 | 0 ±0 |
ENERGY MFE | –0.43 ±0.13 | –0.43 ±0.13 | –0.64 ±0.16 | –0.28 ±0.13 |
ENERGY TARGET | –0.36 ±0.14 | –0.36 ±0.14 | –0.54 ±0.19 | –0.28 ±0.13 |
ENSEMBLE DEFECT | 0.18 ±0.07 | 0.18 ±0.07 | 0.25 ±0.11 | 0.16 ±0.12 |
EXP BP DIST | 0.11 ±0.05 | 0.11 ±0.05 | 0.17 ±0.07 | 0.1 ±0.08 |
PROP NAT CONTACT | 0.87 ±0.09 | 0.87 ±0.09 | 0.78 ±0.14 | 0.81 ±0.17 |
POS ENTROPY | 0.22 ±0.09 | 0.21 ±0.09 | 0.25 ±0.1 | 0.4 ±0.25 |
GC CONTENT | 46.27 ±10.91 | 46.27 ±10.91 | 75.12 ±5.89 | 46.27 ±10.91 |
LN DUAL PROB | –110.35 ±54.12 | –110.34 ±54.12 | –73.5 ±33.32 | –136.7 ±65.62 |
LN PROB | –13.94 ±7.74 | –13.9 ±7.71 | –18.11 ±10.59 | –2.83 ±1.71 |
MH STR DIV | 0.12 ±0.05 | 0.12 ±0.05 | 0.13 ±0.05 | 0.2 ±0.12 |
VIENNA STR DIV | 0.07 ±0.03 | 0.07 ±0.03 | 0.09 ±0.04 | 0.13 ±0.08 |