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Fig. 3 | BMC Bioinformatics

Fig. 3

From: ChARM: Discovery of combinatorial chromatin modification patterns in hepatitis B virus X-transformed mouse liver cancer using association rule mining

Fig. 3

Correlation network of epigenetic modifications. The correlation networks were generated from correlations (r ≥ 0.2) between chromatin modification marks of transcripts in (a) P155, the promoter pattern for the HBx TG livers, b normal cells, and (c) HBx TG liver cells. Each node represents a chromatin modification mark and each edge width was weighted by Pearson correlation values (r). Green edges represent negative correlations and grey edges represent positive correlations. Each node name represents the abbreviated chromatin mark name: h3k4, h3k27, h3k36, pol2s5, met, h3, hx_exn, and pCpG_ratio denote H3K4Me3, H3K27M3, H3K36Me, Pol II S5, DNA methylation, H3, expression in HBx, and CpG ratio, respectively

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BMC Bioinformatics

ISSN: 1471-2105

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