From: PCAN: phenotype consensus analysis to support disease-gene association
Type of knowledge | Resource | Number of results | Potential | AUC | Median rank |
---|---|---|---|---|---|
Pathways | MetaBase | 2355 | 52% | 74% | 19% |
Pathways | Reactome | 2669 | 59% | 73% | 20% |
Neighbors | Metabase | 4367 | 96% | 68% | 22% |
Neighbors | MetaBase HQa | 3623 | 80% | 73% | 16% |
Neighbors | STRING | 3705 | 81% | 71% | 19% |
Neighbors | STRING HQa | 3247 | 71% | 74% | 14% |
Upstream neighbors | Metabase | 4362 | 96% | 65% | 27% |
Upstream neighbors | MetaBase HQa | 3399 | 75% | 70% | 20% |
Upstream neighbors | STRING | 2158 | 47% | 73% | 16% |
Upstream neighbors | STRING HQa | 1825 | 40% | 75% | 14% |
Downstream neighbors | Metabase | 3352 | 74% | 74% | 16% |
Downstream neighbors | MetaBase HQa | 2600 | 57% | 74% | 15% |
Downstream neighbors | STRING | 2069 | 45% | 73% | 18% |
Downstream neighbors | STRING HQa | 1722 | 38% | 74% | 15% |
Pathways + Neighbors | Metabase + MetaBase HQa | 3746 | 82% | 75% | 15% |
Pathways + Neighbors | Reactome + MetaBase HQa | 3861 | 85% | 75% | 16% |
Pathways + Neighbors | MetaBase + STRING HQa | 3515 | 77% | 76% | 14% |
Pathways + Neighbors | Reactome + STRING HQa | 3617 | 80% | 76% | 15% |