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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces

Fig. 5

Details of an example local structure motif in RBPs. a The multiple sequence alignment of five RBPs with the locations of RNA-binding pockets and residues. b The similarities among global protein structures, sequence-based domains and local pockets. Significant similarity is represented by an edge in different colors corresponding to different levels, i.e., green for pocket, yellow for domain and red for global structure. Some proteins contain similar domains, while others do not. All five proteins contain similar RNA-binding pockets serving as local structure motifs, which determine the similar RNA-binding functionality

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BMC Bioinformatics

ISSN: 1471-2105

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