|  | 21–25 nt | 21–22 nt | 24 nt | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Host | Viruses detected | Number of contig hits | % Identity | % Coverage of viral genome by contigs | Number of contig hits | % Identity | % Coverage of viral genome by contigs | Number of contig hits | % Identity | % Coverage of viral genome by contigs |
Vitis vinifera (S1) | GRSPaV | 22 | 94.03 | 76.07 | 21 | 93.57 | 74.65 | n.a. | n.a. | n.a. |
GVBa | 13 | 96.82 | 70.5 | 13 | 97.23 | 66.54 | n.a. | n.a. | n.a. | |
GFkV | 22 | 92.37 | 93.2 | 21 | 92.12 | 94.13 | n.a. | n.a. | n.a. | |
GLRaV-3 | 16 | 99.7 | 19.16 | 14 | 99.71 | 19.44 | n.a. | n.a. | n.a. | |
HSVd | 2 | 100 | 100 | 1 | 100 | 100 | 2 | 100 | 100 | |
Prunus persica (S2) | PNRSV RNA1b | 9 | 98.6 | 82.63 | 8 | 98.68 | 75.76 | n.a. | n.a. | n.a. |
PNRSV RNA2b | 6 | 98.63 | 54.26 | 5 | 98.74 | 49.86 | n.a. | n.a. | n.a. | |
PNRSV RNA3b | 2 | 98.85 | 100 | 1 | 98.66 | 100 | n.a. | n.a. | n.a. | |
Rubus idaeus (S3) | RBDV RNA1 c | 5 | 97.83 | 26.41 | 4 | 97.89 | 16.98 | n.a. | n.a. | n.a. |
RBDV RNA2 c | 8 | 98.77 | 75.08 | 6 | 98.68 | 60.51 | 3 | 99.15 | 16.76 | |
RYNV | 19 | 98.08 | 69.14 | 15 | 97.23 | 51.49 | 1 | 98.08 | 0.66 | |
Brassica sp. (S4) | PCV (RdRp) | 2 | 52.12 | 62.14 | 2 | 69.38 | 41.72 | n.a. | n.a. | n.a. |
ACV (RT) | 2 | 67.5 | 57.44 | 2 | 52.92 | 61.08 | n.a. | n.a. | n.a. | |
Ipomoea batatas (S5) | SPSMV-1 MP and CP | 1 | 99.89 | 98.81 | 1 | 100 | 98.62 | n.a. | n.a. | n.a. |
Fragaria ananassa (S7) | SMoV RNA1 | 6 | 86.67 | 20.57 | 4 | 85.42 | 11.3 | n.a. | n.a. | n.a. |
SMoV RNA2 | 11 | 87.59 | 44.62 | 6 | 87.13 | 28.26 | n.a. | n.a. | n.a. | |
Miscanthus sinensis (S9) | SrMV | 8 | 83.43 | 37.53 | 7 | 81.67 | 37.04 | 3 | 90.03 | 3.16 |
Citrus medica (S10) | CTVd | 26 | 95.7 | 56.79 | 31 | 97.42 | 47.8 | 21 | 97.96 | 29.24 |
CVd-VId | 2 | 99.41 | 100 | 2 | 99.42 | 100 | 1 | 99.36 | 93.69 | |
HSVd | 2 | 99.09 | 100 | 2 | 99.09 | 100 | 2 | 98.84 | 100 | |
Citrus sp. (S12) | Citrus endogenous pararetrovirus | 42 | 90.26 | 77.92 | 3 | 91.35 | 8.87 | 31 | 89.07 | 66.94 |
Pennisetum advena (S17) | MCDV | 29 | 98.45 | 72.14 | 27 | 98.81 | 68.35 | n.a. | n.a. | n.a. |
Citrus latifolia (S18) | CTV | 30 | 98.67 | 33.03 | 21 | 98.69 | 24.75 | n.a. | n.a. | n.a. |
Actinidia (S21) | AcVB | 33 | 93.05 | 41.25 | 18 | 94.24 | 23.21 | 4 | 91.75 | 4.22 |
Nicotiana tabacum | PVY | 3 | 98.63 | 100 | 1 | 98.65 | 100 | 1 | 98.94 | 1.94 |
(S22) | TVCV | 5 | 91.81 | 14.54 | 4 | 89.23 | 12.23 | n.a. | n.a. | n.a. |