Fig. 11From: Comparative visualization of protein secondary structuresPrinciple of the algorithm processing molecular dynamics. Image illustrates the state when we aim to compare three time steps A, B, C of molecular dynamics simulation. First an artificial chain A∪B∪C is created as the union of secondary structures from the three input chains – time steps. Then each of these chains is compared with the artificial chain using the Gap Insertion algorithm and detected gaps are inserted into the chainsBack to article page