From: BicPAMS: software for biological data analysis with pattern-based biclustering
Dataset | ID | Terms | Bicluster with best p-value | ♯Genes in best bicluster |
---|---|---|---|---|
dlbcl | Dl1 | Translation processes (including translational initiation and elongation) | 4.49E-5 | 81 |
 | Dl2 | Transmembrane-related processes (including Golgi apparatus and MHC protein complex) | 5.40E-5 | 83 |
 | Dl3 | Defense response; processes related with intra-cellular communication, including receptor activity | 4.91-5 | 162 |
 | Dl4 | Innate immune responses, including response to interferon-gamma | 1.06E-4 | 58 |
 | Dl5 | Cellular responses to chemical stimulus, including response to cytokine stimulus | 0.001 | 60 |
 | Dl6 | Processes targeting the membrane-enclosed lumen associated with the cell cycle process | 2.92E-12 | 81 |
 | Dl7 | Immune system processes | 1.27E-4 | 52 |
hughes | H1 | Mitochondrion organization and translation; mitochondrial matrix | 2.70E-39 | 416 |
 | H2 | Processes concerning the cell periphery and sporulation; cell wall constituent and organization | 1.73E-4 | 370 |
 | H3 | Ribonucleoprotein complex biogenesis | 3.61E-30 | 426 |
 | H4 | Metabolic and biosynthetic processes of cellular amino acids and carboxylic acids | 1.3E-25 | 581 |
 | H5 | Metabolic processes of organonitrogen and sulfur compounds | 1.62E-4 | 504 |
gasch | G1 | Cellular response to oxidative stress; generation of precursor metabolites and energy | 2.37E-4 | 296 |
 | G2 | Processes to generate precursor metabolites and energy, including the tricarboxylic acid cycle | 1.16E-14 | 954 |
 | G3 | Retrotransposon nucleocapsid; viral procapsid maturation | 4.34E-6 | 102 |
 | G4 | Processes targeting the intracellular organelle lumen and nuclear lumen | 1.17E-47 | 263 |
 | G5 | Nucleolus; ncRNA metabolic processes | 1.03E-61 | 611 |
 | G6 | Intracellular non-membrane-bounded organelle; structural molecule activity | 5.33E-76 | 293 |
 | G7 | Processes targeting the cytosolic part and, in particular, the ribosomal subunit | 1.61E-88 | 460 |
 | G8 | Mitochondrion organization; mitochondrial part; biogenesis of certain protein complexes | 2.06E-26 | 592 |
 | G9 | Regulation of macromolecular biosynthetic processes; protein modification | 2.28E-13 | 1019 |
 | G10 | Organic substance catabolic and metabolic processes (including carbohydrates) | 1.02E-15 | 648 |
 | G11 | General processes associated with ribonucleoprotein complex biogenesis | 1.08E-94 | 784 |