Table 7 Illustrative set of biologically relevant biclusters with different properties
From: BicPAMS: software for biological data analysis with pattern-based biclustering
Dataset | ID | Pattern | \(|\mathcal {L}|\) (items) | Coherency assumption | Postprocessing | ♯Genes | ♯Conds | ♯ p−values <0.01 | ♯ p−values [0.01,0.05] | Best p-value |
|---|---|---|---|---|---|---|---|---|---|---|
dlbcl | B1 | FAABFFF | 6 (A-F) | constant | Merging with tight overlapping | 83 | 7 | 41 | 21 | 1.97E-10 |
| Â | B2 | AAAABCAA | 3 (A-C) | constant | Extensions allowed (tight merging) | 153 | 8 | 9 | 1 | 2.27E-12 |
| Â | B3 | AAAAA/../EEEEE | 5 (A-E) | multiplicative | Reducing with high homogeneity | 119 | 5 | 5 | 18 | 4.12E-8 |
hughes | B4 | EEECEE | 5 (A-E) | constant | Merging allowed | 581 | 6 | 12 | 7 | 1.31E-25 |
| Â | B5 | CCDCBCBCCC | 5 (A-E) | constant | Merging with relaxed overlapping | 654 | 10 | 16 | 4 | 1.31E-17 |
| Â | B6 | AAAAAA/... | 7 (A-G) | additive | Merging with tight overlapping | 476 | 6 | 12 | 10 | 1.92E-6 |
gasch | B7 | AAAGGGA/... | 7 (A-G) | multiplicative | Merging with tight overlapping | 483 | 7 | 57 | 10 | 1.24E-81 |
| Â | B8 | AAABACCCAA/... | 5 (A-E) | additive | Merging allowed | 521 | 10 | 17 | 5 | 4.57E-12 |