Table 2 Proteins for which predictions are shown in Fig. 3. A/B denotes α-helical vs. β-barrel membrane proteins. The complete benchmark dataset is shown in Additional file 1: Table S2
From: Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP
PDBID | A/B | Feature | Family | Subfigure |
|---|---|---|---|---|
3D9S | A | aquaporin | aquaporin | A |
4DXW | A | ion channel | sodium channel | B |
3CSL | B | filled barrel | heme binding | C |
3W9T | B | pore-forming toxin | lectin | D |
2J7A | A | 1-2TM | nitrite reductase | E |
1U19 | A | GPCR | bovine rhodopsin | F |
3TUI | A | ABC transporter | methionine transporter | G |
4ENE | A | ClC channel | chloride channel | H |