Table 5 The nmrstarlib library command-line interface
From: A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank
Command | Description | Example |
|---|---|---|
convert | Convert between NMR-STAR and JSON formats | $ python3 -m nmrstarlib convert bmr18569.str 18569.json \ --from_format=nmrstar --to_format=json $ python3 -m nmrstarlib convert 18569.json bmr18569.str \ --from_format=json --to_format=nmrstar |
csview | View assigned chemical shifts | $ python3 -m nmrstarlib csview 18569 \ --csview_outfile=18569_cs_all --csview_format=png $ python3 -m nmrstarlib csview 18569 \ --aminoacids=GLU,THR --atoms=CA,CB,CG,CG2 \ --csview_outfile=18569_cs_GLU_THR_CA_CB_CG_CG2 \ --csview_format=png |