Table 2 List of 35 new cold related genes identified using the co-expression behavior with known and well characterized genes

Ta.10319.1.A1_s_at

Myb-like

4

3.8

5.2

1.7

Ta.10857.1.A1_at

Cluster: Os10g0566400 protein

2.1

2.8

2

2.9

Ta.13134.1.A1_at

Immediate early protein ICP0

4.6

3.9

5

4.2

Ta.13193.1.S1_at

NADH-ubiquinone oxidoreductase

3.7

3.5

3.5

3.2

Ta.13239.1.S1_at

Pherophorin-C1 protein precursor

4.9

4.8

4.8

5.3

Ta.13595.1.A1_at

BQ169949

3

2.8

2.6

2.9

Ta.1722.1.S1_at

TC434908

4

2.7

4

2.5

Ta.18391.1.S1_at

CA635688

1.9

1.7

1.8

1.7

Ta.18720.1.S1_a_at

Gamma-thionin (Defensin-like protein 1)

6.5

6

5.4

4.7

Ta.19327.1.S1_at

Fe(III) dicitrate ABC transporter

3.6

3

3.8

2.8

Ta.22063.1.S1_s_at

TC421941

3.1

3.3

3.2

3.4

Ta.22766.1.S1_a_at

TC445245

6.9

7.3

8

7.3

Ta.23419.1.S1_x_at

High molecular mass early light-inducible protein

2.6

3.5

2.8

2.8

Ta.24761.2.S1_at

TC376085

1.8

1.2

1.7

1.1

Ta.27719.1.S1_at

5-oxoprolinase; n = 1; Sphingomonas wittichii

5.2

5.2

5.1

5

Ta.27719.2.S1_x_at

TC448971

2.3

2.2

2.6

2

Ta.7053.1.S1_at

TC427799

4.1

3.7

4

3.8

Ta.7091.1.S1_at

TC37493 (P5CS2)

2.9

2.6

3

2.6

Ta.7934.3.S1_at

HNH nuclease

4.8

3.3

4.3

3.9

Ta.9600.1.S1_x_at

Low molecular mass early light-inducible protein

2.7

2.7

2.8

2.7

TaAffx.134872.1.S1_at

TC434386 (Ycf1)

1.1

1.3

1

1.1

TaAffx.144000.1.S1_s_at

Humulus lupulus 26S ribosomal RNA gene

5.6

2.3

5.8

1.9

TaAffx.34169.1.S1_at

TC396129 (embryonic protein DC-8)

4.5

3.5

3.4

5

TaAffx.73215.1.S1_at

TC407368

3.1

2.7

3.2

2.2

TaAffx.38397.1.A1_at

Express protein similar to Os03g01841100

2.9

3.3

3.0

3.0

TaAffx.97142.1.S1_at

weakly similar to UniRef100_Q2IMJ3

3.6

3.2

2.7

3.6

Ta.13153.1.S1_s_at

Cluster: Biotin synthesis protein

0.2

2.2

0.2

1.4

Ta.13232.1.S1_at

Cluster: Sterol desaturase family protein

2.4

3.4

1.4

3.4

Ta.13232.2.S1_at

Cluster: Sterol desaturase family protein

2

2.1

0.7

4

Ta.13784.1.S1_at

Cluster: BLT14.1 protein

5.4

5.7

4

6.4

Ta.14903.1.S1_at

Cluster: Chalcone synthase

4.6

2.3

4.1

1.7

Ta.19303.1.S1_at

Cluster: Expressed protein

3.1

4.3

2.8

4.9

Ta.28533.1.S1_at

Cluster: PS II 10 kDa protein

1.9

2.7

1.8

4.7

TaAffx.116865.2.S1_at

LTPL114 - Protease inhibitor/seed storage/LTP

4.8

5.3

3.7

6

TaAffx.124475.1.A1_at

Cluster: Hblt14.2 protein

2.9

4.1

1.4

6.4

TaAffx.144000.1.S1_s_at

Humulus lupulus 26S

5.6

2.3

5.8

1.9

TaAffx.34169.1.S1_at

TC396129

4.5

3.5

2.8

5