| PDa
| FDb
| SRc
| PDRd
|
---|
RRs | 214,942 | 21,494,295 | 21,494,295 | 21,494,295 |
HQRs | 143,912 | 14,388,844 | 14,388,844 | 14,388,844 |
URs | 27,150 | 860,144 | 860,144 | 860,144 |
HRURs | 6264 | 60,228 | 60,228 | 60,228 |
RiHRURs | 116,555 | 13,388,423 | 13,388,423 | 13,388,423 |
Contigs assemblede
| 2.1 | 46.0 | 1.0 | 3.9 |
Max contig length | 3119 | 1473 | 3,207 | 3148 |
Average contig length | 2319 | 321 | 3207 | 1268 |
% of Mapped HRURs | 95.9% | 70.3% | 67.4% | 69.9% |
% of Mapped RiHRURs | 80.4% | 68.7% | 82.7% | 84.5% |
- The full data sets were used in the BBAP assembly with FD, SR, and PDR approaches, whereas partial data sets consisting of 1% of randomly selected RRs were used in the BBAP PD assembly approach
-
aPartial data set de novo assembly
-
bFull data set de novo assembly
-
cSanger reference assembly
-
dPartial data set reference assembly of the full data set
-
eOnly minimum assembled contig length > 150 bp was shown
-
RRs raw reads, HQRs high quality reads (quality score threshold = 20, i.e., sequencing error rate = 1%), URs unique representative reads, HRURs high redundancy unique representative reads (unique representative reads with redundancy threshold = 5), RiHRURs reads included in high redundancy unique representative reads