Table 3 Assembled results of in silico generated data sets from the reference HBV genome by different methodsa
Data set size | Method | BBAP FD | Velvet | SOAPdenovo | Genovo | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Error rate | 10−4 | 10−3 | 10−2 | 10−4 | 10−3 | 10−2 | 10−4 | 10−3 | 10−2 | 10−4 | 10−3 | 10−2 | |
55X | Coverage | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 |
Accuracy | 1 | 1 | 0.99 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | |
# of contigs | 1 | 1 | 2 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | |
557X | Coverage | 1 | 1 | 1 | 1 | 0.99 | 1 | 0 | 1 | 0.27 | 1 | 1 | 1 |
Accuracy | 1 | 1 | 1 | 1 | 1 | 0.99 | 0 | 0.99 | 0.99 | 1 | 1 | 1 | |
# of contigs | 1 | 1 | 2 | 1 | 1 | 9 | 0 | 1 | 5 | 1 | 1 | 1 | |
5,579X | Coverage | 1 | 1 | 1 | 0.99 | 0.96 | 0.03 | 1 | 0.01 | 0.43 | 1 | 1 | 1 |
Accuracy | 1 | 1 | 1 | 1 | 1 | 0.59 | 1 | 0.20 | 0.99 | 1 | 1 | 0.99 | |
# of contigs | 1 | 1 | 1 | 1 | 6 | 1 | 1 | 0 | 11 | 1 | 1 | 1 | |
55,799X | Coverage | 1 | 1 | 1 | 0.98 | 0 | 0.11 | 0.02 | 0 | 0.04 | 1 | 1 | 1 |
Accuracy | 1 | 1 | 1 | 1 | 0 | 0.97 | 0.40 | 0 | 0.80 | 1 | 1 | 0.99 | |
# of contigs | 1 | 1 | 1 | 3 | 0 | 2 | 0 | 0 | 1 | 3 | 2 | 5 | |