From: HLAscan: genotyping of the HLA region using next-generation sequencing data
9 families | 90× (10 individuals) | 60× (17 individuals) | 30× (25 individuals) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
# alleles | correct | missing | wrong | # alleles | correct | missing | wrong | # alleles | correct | missing | wrong | |
HLA-A | 20 | 20 | 0 | 0 | 34 | 32 | 0 | 2 | 50 | 47 | 2 | 1 |
HLA-B | 20 | 20 | 0 | 0 | 34 | 33 | 0 | 1 | 50 | 45 | 1 | 4 |
HLA-C | 20 | 20 | 0 | 0 | 34 | 33 | 0 | 1 | 50 | 49 | 1 | 0 |
HLA-DQB1 | 20 | 20 | 0 | 0 | 34 | 33 | 0 | 1 | 50 | 50 | 0 | 0 |
HLA-DRB1 | 20 | 20 | 0 | 0 | 34 | 33 | 0 | 1 | 50 | 49 | 1 | 0 |
All | 100 | 100 | 0 | 0 | 170 | 164 | 0 | 6 | 250 | 240 | 5 | 5 |
Percentage | 100 | 0 | 0 | 96.5 | 0 | 3.5 | 96 | 2 | 2 |