Table 1 Organization of the current reference set of pathways in NFPscanner. We compiled 766 entries from 7 pathway databases — KEGG, Reactome, NCI, Biocarta, Spike, HumanCyc and PANTHER — into 49 biomedically relevant categories of basic networks, which are listed in the NFPscanner reference sets

Genetic Information Processing

7

22

40

5

19

93

Environmental Information Processing

27

6

16

29

78

Cellular Processes

13

23

9

25

46

116

Organismal Systems

61

14

26

28

129

Metabolism

12

12

Signal Transduction

23

1

83

107

Transport Processes

8

8

Biosynthesis

20

20

Degradation

10

10

Modification

15

15

Brain

11

11

Cell Adhesion

31

31

Cytokine and Chemokine

25

25

Development

7

7

Growth Factor

22

22

Hormone

16

16

Immmune Response

11

11

Kinase and Phosphatase

12

12

Ras Superfamily

11

11

Second Messengers

8

8

Transcription Factor

27

27

Cell Cycle

9

9

DNA Damage Response

8

8

Hearing Related Pathways

5

5

Programmed Cell Death

6

6

Total

108

108

199

28

46

72

205

766