Table 4 Best performing substitution matrices of the PFASUM Search Matrices and Standard Search Matrices sets for the three test scenarios
From: PFASUM: a substitution matrix from Pfam structural alignments
Database | Matrix | Gap parameters | Coverage |
|---|---|---|---|
ASTRAL20 | VTML200 | -14/-1 | 0.1598 |
| Â | PFASUM60 | -16/-1 | 0.1706 |
ASTRAL40 | VTML200 | -14/-1 | 0.4392 |
| Â | PFASUM43 | -13/-1 | 0.4448 |
ASTRAL70 | VTML200 | -9/-2 | 0.5459 |
| Â | PFASUM31 | -13/-2 | 0.5508 |