Table 8 Average SP scores of different MSA tools with different number of sequences and average length
From: CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment
Dataset | Number | Kalign | MAFFT | HAlign(one node) | CMSA(CPU) | CMSA(CPU/GPU) |
|---|---|---|---|---|---|---|
D1 | 10000 | 0.570 | 0.560 | 0.340 | 0.467 | 0.428 |
100000 | - | 0.561 | 0.340 | 0.478 | 0.431 | |
500000 | - | - | 0.372 | 0.473 | 0.423 | |
D2 | 10000 | 0.458 | 0.472 | 0.329 | 0.467 | 0.447 |
100000 | - | - | 0.380 | 0.474 | 0.454 | |
500000 | - | - | 0.327 | 0.480 | 0.449 | |
D3 | 10000 | 0.480 | 0.479 | 0.401 | 0.474 | 0.414 |
100000 | - | - | 0.376 | 0.477 | 0.437 | |
500000 | - | - | - | 0.472 | 0.441 |