From: GenHap: a novel computational method based on genetic algorithms for haplotype assembly
GenHap | HapCol | |||||||
---|---|---|---|---|---|---|---|---|
f SNPs | cov | #SNPs | Avg HE | Std dev HE | Avg running time [s] | Avg HE | Std dev HE | Avg running time [s] |
100 | ā¼30Ć | 500 | 0.04 | 0.08 | 0.21 | 0.00 | 0.00 | 0.62 |
1000 | 0.09 | 0.08 | 0.36 | 0.00 | 0.00 | 1.20 | ||
5000 | 0.18 | 0.06 | 3.17 | 0.01 | 0.03 | 5.35 | ||
10000 | 2.50 | 5.52 | 10.33 | 6.55 | 16.38 | 10.23 | ||
200 | ā¼30Ć | 500 | 0.09 | 0.14 | 0.34 | 0.00 | 0.00 | 0.50 |
1000 | 0.09 | 0.10 | 0.63 | 0.01 | 0.03 | 0.96 | ||
5000 | 3.61 | 3.43 | 6.07 | 0.38 | 0.78 | 4.90 | ||
10000 | 2.15 | 1.62 | 17.24 | N/A | N/A | N/A |