From: Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
Input files | Gromacs package analysis | Output 1 | Output 2 |
---|---|---|---|
2mu8_sd_em.edr | Energy | 2mu8_potentialsd.xvg | 2mu8_potentialsd.png |
2mu8_cg_em.edr | Energy | 2mu8_potentialcg.xvg | 2mu8_potentialcg.png |
2mu8_nvt.edr | Energy | 2mu8_temperature_nvt.xvg | 2mu8_temperature_nvt.png |
2mu8_npt.edr | Energy | 2mu8_temperature_npt.xvg | 2mu8_temperature_npt.png |
2mu8_em.tpr and 2mu8.xtc | rms | 2mu8_rmsd_cris.xvg | 2mu8_rmsd_cris.png |
2mu8_pr.tpr and 2mu8.xtc | rms | 2mu8_rmsd_prod.xvg | 2mu8_rmsd_prod.png |
2mu8_pr.tpr and 2mu8.xtc | gyrate | 2mu8_gyrate.xvg | 2mu8_gyrate.png |
2mu8_pr.tpr and 2mu8.xtc | rmsf | 2mu8_rmsf_residue.xvg | 2mu8_rmsf_residue.png |
2mu8_pr.tpr and 2mu8.xtc | sasa | 2mu8_sas_residue.xvg | 2mu8_sas_residue.png |