Table 1 Hypermarameters used in the model
Hyperparameters | Datasets | |||||
|---|---|---|---|---|---|---|
Synthetic | MNIST | Cortex | PBMC | Retina | Heart cell atlas | |
Distribution | Gaussian | Binoimal | NB | NB | NB | NB |
Latent dimension | 2 | 10 | 10 | 10 | 10 | 10 |
Hidden dimension | 20 | 512 | 512 | 512 | 512 | 512 |
Weight \(\lambda\) | \(10^{3}\) | \(10^{3}\) | \(10^{3}\) | \(10^{3}\) | \(10^{3}\) | \(10^{3}\) |
Iteration ratio I | 5 | 5 | 5 | 5 | 5 | 5 |
Covariate effects | No | No | No | No | Yes | Yes |
(CVAE) Hidden dimension | None | None | None | None | 128 | 128 |