pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

Table 2 Composition of each meta-dataset used for benchmarking pyComBat, Scanpy’s implementation of ComBat, ComBat and ComBat-Seq

Dataset	Reference(s)
Ovarian Cancer (microarray)
GSE18520	[22]
GSE66957
GSE69428	[23]
GSE9891	[24]
GSE26712	[25, 26]
GSE38666	[27, 28]
Multiple Myeloma (microarray)
GSE5900	[29,30,31]
GSE66291	[32, 33]
GSE68891
GSE122231	[34, 35]
Breast cancer (RNA-Seq)
GSE83083	[36]
GSE59765	[37]
Colon cancer (RNA-Seq)
phs000892.v6.p1	[38]
phs000178.v11.p8	[39]

ISSN: 1471-2105