Table 4 Performance on Arabidopsis 3D Digital Tissue Atlas
From: Cellstitch: 3D cellular anisotropic image segmentation via optimal transport
Dataset | Method | Precision | Recall | AP | mAP |
|---|---|---|---|---|---|
Anther | CellStitch\(^*\) | \(\mathbf {0.66 \pm 0.10}\) | \(\mathbf {0.53 \pm 0.11}\) | \(\mathbf {0.42 \pm 0.10}\) | \(\mathbf {0.41 \pm 0.08}\) |
Cellpose2D | \(0.48 \pm 0.11\) | \(\mathbf {0.53 \pm 0.10}\) | \(0.33 \pm 0.08\) | \(0.34 \pm 0.07\) | |
Cellpose3D | \(0.41 \pm 0.17\) | \(0.38 \pm 0.13\) | \(0.24 \pm 0.10\) | \(0.23 \pm 0.08\) | |
PlantSeg | \(0.31 \pm 0.05\) | \(0.60 \pm 0.10\) | \(0.26 \pm 0.04\) | \(0.26 \pm 0.04\) | |
Filament | CellStitch\(^*\) | \(\mathbf {0.74 \pm 0.14}\) | \(0.53 \pm 0.12\) | \(\mathbf {0.46 \pm 0.13}\) | \(\mathbf {0.46 \pm 0.11}\) |
Cellpose2D | \(0.51 \pm 0.15\) | \(\mathbf {0.57 \pm 0.13}\) | \(0.38 \pm 0.13\) | \(0.38 \pm 0.12\) | |
Cellpose3D | \(0.03 \pm 0.02\) | \(0.22 \pm 0.11\) | \(0.03 \pm 0.02\) | \(0.03 \pm 0.02\) | |
PlantSeg | \(0.37 \pm 0.08\) | \(0.31 \pm 0.13\) | \(0.20 \pm 0.08\) | \(0.21 \pm 0.06\) | |
Leaf | CellStitch\(^*\) | \(\mathbf {0.83 \pm 0.17}\) | \(\mathbf {0.75 \pm 0.19}\) | \(\mathbf {0.68 \pm 0.21}\) | \(\mathbf {0.66 \pm 0.18}\) |
Cellpose2D | \(0.65 \pm 0.19\) | \(\mathbf {0.77 \pm 0.19}\) | \(0.56 \pm 0.20\) | \(0.55 \pm 0.18\) | |
Cellpose3D | \(0.07 \pm 0.05\) | \(0.53 \pm 0.20\) | \(0.06 \pm 0.04\) | \(0.06 \pm 0.04\) | |
PlantSeg | \(0.30 \pm 0.08\) | \(0.71 \pm 0.20\) | \(0.27 \pm 0.09\) | \(0.27 \pm 0.08\) | |
Pedicel | CellStitch\(^*\) | \(0.57 \pm 0.23\) | \(\mathbf {0.44 \pm 0.16}\) | \(\mathbf {0.35 \pm 0.16}\) | \(\mathbf {0.36 \pm 0.13}\) |
Cellpose2D | \(0.36 \pm 0.19\) | \(\mathbf {0.44 \pm 0.15}\) | \(0.25 \pm 0.13\) | \(0.26 \pm 0.11\) | |
Cellpose3D | \(\mathbf {0.61 \pm 0.25}\) | \(0.30 \pm 0.13\) | \(0.27 \pm 0.13\) | \(0.28 \pm 0.09\) | |
PlantSeg | \(0.29 \pm 0.07\) | \(0.39 \pm 0.13\) | \(0.20 \pm 0.06\) | \(0.21 \pm 0.05\) | |
Sepal | CellStitch\(^*\) | \(\mathbf {0.51 \pm 0.12}\) | \(\mathbf {0.43 \pm 0.16}\) | \(\mathbf {0.31 \pm 0.12}\) | \(\mathbf {0.33 \pm 0.09}\) |
Cellpose2D | \(0.33 \pm 0.11\) | \(\mathbf {0.44 \pm 0.17}\) | \(0.23 \pm 0.09\) | \(0.25 \pm 0.08\) | |
Cellpose3D | \(0.41 \pm 0.23\) | \(0.34 \pm 0.12\) | \(0.20 \pm 0.10\) | \(0.21 \pm 0.09\) | |
PlantSeg | \(0.34 \pm 0.07\) | \(0.43 \pm 0.14\) | \(0.23 \pm 0.06\) | \(0.25 \pm 0.05\) | |
Valve | CellStitch\(^*\) | \(\mathbf {0.71 \pm 0.07}\) | \(0.47 \pm 0.04\) | \(\mathbf {0.40 \pm 0.05}\) | \(\mathbf {0.41 \pm 0.11}\) |
Cellpose2D | \(0.58 \pm 0.09\) | \(0.47 \pm 0.04\) | \(0.35 \pm 0.05\) | \(0.37 \pm 0.05\) | |
Cellpose3D\(^*\) | \(0.67 \pm 0.10\) | \(\mathbf {0.51 \pm 0.05}\) | \(\mathbf {0.41 \pm 0.06}\) | \(\mathbf {0.40 \pm 0.05}\) | |
PlantSeg | \(0.53 \pm 0.08\) | \(0.38 \pm 0.07\) | \(0.29 \pm 0.06\) | \(0.32 \pm 0.05\) |