Table 1 Runtime performance of Torch eCpG GPU implementation for the indicated number of samples, CpG loci, and gene expression loci. Data are plotted in Fig. 5
Number of samples | Number of CpG loci | Number of genes | Runtime (minutes) |
|---|---|---|---|
100 | 25,000 | 40,000 | 6.29 |
100 | 500,000 | 40,000 | 121.42 |
100 | 1,000,000 | 40,000 | 241.24 |
100 | 25,000 | 20,000 | 3.06 |
100 | 500,000 | 20,000 | 62.04 |
100 | 1,000,000 | 20,000 | 123.80 |
1000 | 25,000 | 40,000 | 16.48 |
1000 | 500,000 | 40,000 | 327.85 |
1000 | 1,000,000 | 40,000 | 654.57 |
1000 | 25,000 | 20,000 | 8.35 |
1000 | 500,000 | 20,000 | 167.03 |
1000 | 1,000,000 | 20,000 | 334.29 |
10,000 | 25,000 | 40,000 | 147.18 |
10,000 | 500,000 | 40,000 | 2926.99 |
10,000 | 1,000,000 | 40,000 | 5892.98 |
10,000 | 25,000 | 20,000 | 73.57 |
10,000 | 500,000 | 20,000 | 1470.24 |
10,000 | 1,000,000 | 20,000 | 2937.30 |