Table 5 Mini projects designed for EANBiT-RT

5

NextFlow pipeline for ONT long read meta-transcriptomic data analysis

Stingless Bees Metabarcoding

ONT Whole Genome Assembly—E. Coli

Sea turtle immunogenetics

Antelope phylogenetics

Chelonid Alphaherpervirus 5 phylogeny

4

Whole Genome Assembly and Annotation of SARS-CoV2

Machine Learning for Genomics

ONT Metatranscriptomics Mini project

3

Reproducing a Machine Learning paper

Reproduce published ONT pipeline

Genomic Characterization of E-coli Isolates from Rural Drinking Water Systems

Interrogating Public Data Sets and Paths to Results on Covid19 in East Africa

Origin of antimicrobial resistance E-Coli isolates in a pastoralist community using whole genome sequence data

Develop: RNA-Seq data processing and gene expression analysis workflow

Variant call from NGS data of two accessions of Lablab purpureus

2

Microbiome of Seagrass species on the Kenyan coast

Microbiome Metagenomics Analysis of Kilifi Creek Mangrove Sediments

Reproduce: Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya

Develop a variant call-to-action workflow pipeline

Whole Genome Assembly, Annotation, and Phylogenetic Analysis of Rice Fungus