Fig. 4
From: kalis: a modern implementation of the Li & Stephens model for local ancestry inference in R
Log-log plot of seconds per variant performance (y-axis) of the forward algorithm on 100,000 haplotypes, against the number of variants propagated (x-axis). Each panel is a different instruction set (AVX-512/AVX2/none). Line colour denotes number of CPU threads, whilst a dashed line indicates pinned threads and a solid line indicates no thread pinning. In total, using AVX-512, 48 threads, and pinned threads, it takes less approximately 38 minutes to propagate a \(100000 \times 100000\) forward table over 10,000 variants