Table 2 The content of the core data structures representing forward and backward table objects, together with their correspondence to mathematical quantities
From: kalis: a modern implementation of the Li & Stephens model for local ancestry inference in R
kalisForwardTable object | kalisBackwardTable object | Data type | ||
|---|---|---|---|---|
alpha | \(= \alpha ^\ell _{\cdot \cdot }\) | beta | \(= \beta ^\ell _{\cdot \cdot }\) | \(N \times N\) matrix |
alpha.f | \(= F^\ell\) | beta.g | \(= G^\ell\) | Vector length N |
l | \(= \ell\) | l | \(= \ell\) | Integer scalar |
from_recipient | from_recipient | Integer scalar | ||
to_recipient | to_recipient | Integer scalar | ||
pars.sha256 | pars.sha256 | Character | ||
| Â | beta.theta | Logical scalar | ||