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Table 4 Comparison of PEbA alignments and BLOSUM based alignments (in average SP scores) for each pairwise identity range

From: Protein embedding based alignment

 

0-9 (%)

10-19 (%)

20-29 (%)

30-39 (%)

40-49 (%)

RV11

0.29\(^a\)/0.04\(^b\)

0.55/0.15

0.71/0.39

–\(^c\)

–

RV12

–

–

0.78/0.51

0.87/0.67

0.91/0.76

RV911

0.14/0.04

0.39/0.20

0.53/0.34

0.67/0.50

–

RV912

–

–

0.75/0.54

0.75/0.60

0.78/0.64

RV913

–

–

–

–

0.89/0.76

  1. \(^a\): PEbA; \(^b\): BLOSUM62; \(^c\): data not shown when there are fewer than 10 pairwise alignments within that range of pairwise identity
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BMC Bioinformatics

ISSN: 1471-2105

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