Table 2 Consistency score using CTCF, H3K27ac and RNAPII recovery between high and low resolution
From: Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness
Tools | CTCF (%) | H3K27ac (%) | RNAPII (%) | Consistency score (%) |
|---|---|---|---|---|
Chromosight | 0.00 | 0.00 | 0.00 | 0.00 |
cLoops*** | 100.00 | 100.00 | 100.00 | 100.00 |
cLoops2*** | 99.70 | 95.35 | 98.20 | 97.75 |
FitHiC2 | 97.74 | 98.84 | 99.41 | 98.66 |
FitHiChIP | 72.33 | 97.57 | 97.15 | 89.02 |
HiCCUPS* | 81.07 | 85.19 | 91.95 | 86.07 |
HiCExplorer** | 88.37 | 90.91 | 97.48 | 92.25 |
LASCA | 90.06 | 94.55 | 94.63 | 93.08 |
Mustache | 88.24 | 89.69 | 97.80 | 91.91 |
Peakachu | 63.93 | 94.88 | 93.37 | 84.06 |
SIP | 73.86 | 73.15 | 93.00 | 80.00 |