Table 3 Biological score averaging CTCF, H3K27ac and RNAPII recovery efficiency rate
From: Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness
Tools | CTCF (%) | H3K27ac (%) | RNAPII (%) | Biological score (%) |
|---|---|---|---|---|
Chromosight | 66.0440723 | 80.81 | 54.12 | 66.99 |
cLoops*** | 100 | 100.00 | 100.00 | 100.00 |
cLoops2*** | 8.311488926 | 1.88 | 0.00 | 3.40 |
FitHiC2 | 0 | 0.00 | 0.70 | 0.23 |
FitHiChIP | 28.26098576 | 17.81 | 19.30 | 21.79 |
HiCCUPS* | 18.46754736 | 16.26 | 7.33 | 14.02 |
HiCExplorer** | 10.76000424 | 9.68 | 1.62 | 7.35 |
LASCA | 4.244814356 | 3.00 | 2.48 | 3.24 |
Mustache | 4.687381023 | 5.15 | 0.15 | 3.33 |
Peakachu | 28.60921051 | 6.65 | 5.26 | 13.51 |
SIP | 21.96560705 | 14.75 | 2.88 | 13.20 |