Holomics - a user-friendly R shiny application for multi-omics data integration and analysis

BMC Bioinformatics

Table 1 Summary of received results from pre-filtering and single-omics filtering processes

	M		16S		ITS		T
Original no. features	23		4,398		3,252		27,964
No. features after pre-filtering	–		779		290		10,000
Single-omics analyses	PCA	PLS-DA	PCA	PLS-DA	PCA	PLS-DA	PCA	PLS-DA
No. features after filtering	23	23	232	40	252	119	112	16
No. pre-selected components	–	5	–	3	–	3	–	5
Ideal no. components	3	4	8	1	8	2	5	1
Filtering runtime (min)	1	2	10	10	10	10	5	15

Summary of the results obtained from the pre-filtering and single-omics filtering processes of the investigated omics datasets, metabolomics (M), bacterial microbiomics (16S), fungal microbiomics (ITS), and transcriptomics (T)

ISSN: 1471-2105