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Table 2 Summary of used configurations and received results testing the (s)PLS analyses

From: Holomics - a user-friendly R shiny application for multi-omics data integration and analysis

 

Bidirectional (s)PLS

Datasets

16S & ITS vs. ITS & 16S

M & T vs. T & M

Filtered with

PCA

PLS-DA

PCA

PLS-DA

No. features after tuning

10 & 10 vs. 10 & 10

40 & 10 vs. 10 & 25

16 & 10 vs. 10 & 18

10 & 10 vs. 10 & 10

No. pre-selected components

4

4

4

4

Ideal no. components

1

1

1

1

Tuning runtime (min)

10

2

2

1

  1. (s)PLS was performed with two omics dataset pairs. One pair was formed from the two microbiomics datasets (16S and ITS), and the second was composed of the transcriptomic (T) and metabolomic (M) datasets. Both pairwise analyses were done bidirectionally
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BMC Bioinformatics

ISSN: 1471-2105

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