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Table 3 Summary of the configurations and results from the DIABLO analysis

From: Holomics - a user-friendly R shiny application for multi-omics data integration and analysis

 

DIABLO

Datasets

M & T & ITS & 16S

Filtered with

PCA

PLS-DA

No. features after tuning

10 & 10 & 10 & 14

10 & 10 & 50 & 10

Design matrix value

0.9

0.8

No. pre-selected components

7

7

Ideal no. components

1

1

Runtime (min)

120

40

  1. For this multi-omics analysis, all datasets were integrated: the metabolomics (M), transcriptomics (T), and the two microbiomics (16S and ITS) datasets