Table 7 The averaged predictive ability across 100 replications for different methods in 4 scenes of simulation
From: Ensemble learning for integrative prediction of genetic values with genomic variants
Method | 0.2 | 0.5 | ||||||
|---|---|---|---|---|---|---|---|---|
5qtl | 1000qtl | 5qtl | 1000qtl | |||||
Predictive ability | p-value | Predictive ability | p-value | Predictive ability | p-value | Predictive ability | p-value | |
ELPGV | 0.4346 ± 0.0116 | — | 0.3079 ± 0.0109 | — | 0.7034 ± 0.0064 | — | 0.5851 ± 0.0085 | — |
BayesA | 0.4042 ± 0.0122 | 3.317E−15 | 0.2961 ± 0.0110 | 1.565E−08 | 0.6865 ± 0.0068 | 1.057E−16 | 0.5765 ± 0.0085 | 2.652E−17 |
BayesB | 0.4257 ± 0.0118 | 0.001E−00 | 0.2842 ± 0.0112 | 1.096E−08 | 0.6985 ± 0.0065 | 0.002E−00 | 0.5756 ± 0.0086 | 6.910E−09 |
BayesCπ | 0.3741 ± 0.0140 | 4.577E−11 | 0.2956 ± 0.0108 | 2.828E−10 | 0.6955 ± 0.0064 | 1.712E−12 | 0.5768 ± 0.0086 | 2.048E−16 |
GBLUP | 0.2952 ± 0.0144 | 1.032E−22 | 0.2959 ± 0.0110 | 6.161E−07 | 0.5505 ± 0.0096 | 3.553E−34 | 0.5727 ± 0.0084 | 7.160E−13 |