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Table 3 5-Fold cross-validation performances of methods on Pan dataset

From: xCAPT5: protein–protein interaction prediction using deep and wide multi-kernel pooling convolutional neural networks with protein language model

Method

Accuracy (%)

Precision (%)

Recall (%)

Specificity (%)

F1-Score (%)

MCC (%)

PIPR (2019)

98.26 ± 0.02

98.68 ± 0.04

97.40 ± 0.04

97.93 ± 0.03

98.04 ± 0.02

96.49 ± 0.03

FSNN-LGBM (2021)

99.50 ± 0.28

98.48 ± 0.12

99.39 ± 0.54

99.58 ± 0.10

99.43 ± 0.32

98.98 ± 0.57

Graph-BERT (2023)

99.02 ± 0.13

98.94 ± 0.88

99.15 ± 0.95

98.57 ± 1.19

99.04 ± 0.10

98.00 ± 0.28

Our xCAPT5

99.77 ± 0.02

99.75 ± 0.03

99.75 ± 0.02

99.80 ± 0.02

99.62 ± 0.06

99.55 ± 0.03

  1. NA denotes that data is not available. Report with mean and standard deviation. The bold is the best performance in each metric