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Table 5 5-Fold cross-validation performances of methods on stringent Chen multispecies datasets

From: xCAPT5: protein–protein interaction prediction using deep and wide multi-kernel pooling convolutional neural networks with protein language model

Similarity

Methods

Accuracy (%)

F1-Score (%)

Any

PIPR (2019)

98.19

98.17

DeepTrio (2022)

98.20

98.20

TAGPPI (2022)

99.15

99.15

Our xCAPT5

99.72

99.61

\(\le 40\%\)

PIPR (2019)

98.29

98.28

DeepTrio (2022)

97.83

97.98

TAGPPI (2022)

99.10

99.16

Our xCAPT5

99.76

99.60

\(\le 25\%\)

PIPR (2019)

97.91

98.08

DeepTrio (2022)

97.52

97.75

TAGPPI (2022)

98.99

99.06

Our xCAPT5

99.74

99.61

\(\le 10\%\)

PIPR (2019)

97.54

97.79

DeepTrio (2022)

97.32

97.62

TAGPPI (2022)

98.97

99.08

Our xCAPT5

99.70

99.53

\(\le 1\%\)

PIPR (2019)

97.51

97.80

DeepTrio (2022)

97.11

97.47

TAGPPI (2022)

98.89

98.89

xCAPT5

99.73

99.60

  1. Report with mean. The bold is the best performance in each metric