Table 2 Classification Performance with Reference Transcripts of genus Arabidopsis
Arabidopsis RNA | A Bowtie2 | B Bo_AS | C Bo_RF | D STAR | E St_AS | F St_RF | G Salmon | H bwa |
|---|---|---|---|---|---|---|---|---|
Accuracy | 72.7% | 81.0% | 95.0% | 73.0% | 80.9% | 88.5% | 70.8% | 75.2% |
Sensitivity | 56.9% | 70.7% | 90.6% | 56.0% | 69.9% | 87.2% | 48.1% | 60.9% |
Specificity | 88.5% | 91.3% | 99.5% | 90.0% | 91.9% | 89.9% | 93.5% | 89.0% |
Precision | 83.2% | 89.1% | 99.4% | 84.9% | 89.6% | 89.6% | 88.0% | 84.7% |
F1-score | 67.5% | 78.8% | 94.8% | 67.5% | 78.5% | 88.3% | 62.2% | 70.9% |
MCC | 0.478 | 0.634 | 0.904 | 0.489 | 0.633 | 0.770 | 0.466 | 0.521 |
AUPRC | – | – | 99.5% | – | – | 96.5% | – | – |
AUROC | – | – | 99.4% | – | – | 96.2% | – | – |
Pos Pref | 34.2% | 39.7% | 45.6% | 33.0% | 39.0% | 48.6% | 27.3% | 36.0% |
Ties | – | 14.0% | – | – | 14.7% | – | – | – |