Table 3 Classification Performance with Reference Genomes of genus Arabidopsis
Arabidopsis DNA | A HiSat2 | B Hi_AS | C Hi_RF | D STAR | E St_AS | F St_RF | G bwa |
|---|---|---|---|---|---|---|---|
Accuracy | 73.3% | 82.8% | 94.5% | 72.9% | 81.4% | 88.6% | 76.4% |
Sensitivity | 50.1% | 72.1% | 91.2% | 49.6% | 69.9% | 87.6% | 56.1% |
Specificity | 96.4% | 93.5% | 98.3% | 96.2% | 93.0% | 89.7% | 96.7% |
Precision | 93.4% | 91.7% | 98.1% | 92.9% | 90.9% | 89.5% | 94.4% |
F1-score | 65.2% | 80.7% | 94.5% | 64.6% | 79.0% | 88.5% | 70.4% |
MCC | 0.525 | 0.671 | 0.897 | 0.518 | 0.646 | 0.773 | 0.578 |
AUPRC | – | – | 99.3% | – | – | 96.5% | – |
AUROC | – | – | 99.2% | – | – | 96.2% | – |
Pos Pref | 26.8% | 39.3% | 46.5% | 26.7% | 38.4% | 48.9% | 29.7% |
Ties | – | 13.3% | – | – | 14.7% | – | – |