Table 4 Classification Performance with Reference Transcripts of genus Brassica
Brassica RNA | A Bowtie2 | B Bo_AS | C Bo_RF | D STAR | E St_AS | F St_RF | G Salmon | H bwa |
|---|---|---|---|---|---|---|---|---|
Accuracy | 89.3% | 92.1% | 93.9% | 91.8% | 92.2% | 93.8% | 89.4% | 89.6% |
Sensitivity | 92.8% | 94.7% | 92.8% | 94.3% | 94.6% | 93.7% | 89.3% | 92.9% |
Specificity | 85.9% | 89.5% | 94.9% | 89.2% | 89.8% | 93.9% | 89.6% | 86.3% |
Precision | 86.8% | 90.1% | 94.8% | 89.7% | 90.3% | 93.9% | 89.6% | 87.1% |
F1-score | 89.7% | 92.3% | 93.8% | 92.0% | 92.4% | 93.8% | 89.4% | 89.9% |
MCC | 0.789 | 0.844 | 0.877 | 0.836 | 0.846 | 0.876 | 0.788 | 0.793 |
AUPRC | – | – | – | – | – | 98.4% | – | – |
AUROC | – | – | 98.4% | – | – | 98.4% | – | – |
Pos Pref | 53.4% | 52.6% | 49.0% | 52.6% | 52.4% | 49.9% | 49.8% | 53.3% |
Ties | – | 3.3% | – | – | 5.0% | – | – | – |