Table 5 Classification Performance with Reference Genomes of genus Brassica
Brassica DNA | A HiSat2 | B Hi_AS | C Hi_RF | D STAR | E St_AS | F St_RF | G bwa |
|---|---|---|---|---|---|---|---|
Accuracy | 93.0% | 93.1% | 95.1% | 94.5% | 92.7% | 94.3% | 94.8% |
Sensitivity | 95.8% | 95.7% | 94.7% | 97.1% | 94.8% | 94.0% | 97.3% |
Specificity | 90.3% | 90.6% | 95.6% | 91.9% | 90.5% | 94.6% | 92.3% |
Precision | 90.8% | 91.0% | 95.6% | 92.3% | 90.9% | 94.6% | 92.6% |
F1-score | 93.2% | 93.3% | 95.1% | 94.6% | 92.8% | 94.6% | 94.9% |
MCC | 0.862 | 0.863 | 0.903 | 0.890 | 0.854 | 0.886 | 0.897 |
AUPRC | – | – | 99.0% | – | – | 98.5% | – |
AUROC | – | – | 98.9% | – | – | 98.5% | – |
Pos Pref | 52.8% | 52.6% | 49.5% | 52.6% | 52.2% | 49.7% | 52.5% |
Ties | – | 3.4% | – | – | 4.8% | – | – |