From: Improving somatic exome sequencing performance by biological replicates
Tool and algorithm | Version |
---|---|
Trimmomatic | 0.3 |
Reference Genome | GRCh38.d1.vd1 |
bwa | 0.7.15 |
bowtie2 | 2.3.5.1 |
SAMtools | 1.8 |
Picard | 2.17.11 |
Qualimap | 2.2.2a |
GATK4 | 4.3.0.0 |
Strelka2 | 2.9.10 |
SomaticSniper | 1.0.5.0 |
vcftools | 0.1.16 |
bcftools | 1.9 |
PyVCF | 0.6.8 |
NeuSomatic | 0.2.1 |
SomaticSeq | 2.7.2 |