Fig. 1

biomapp::chip framework pipeline. (A) The main workflow is structured in various interconnected modules. Each module is responsible for a specific part of the overall functionality of the package. Preprocessing involves identifying and normalizing peaks in the data. (B) In the counting step, the dataset is loaded, a background model is generated, followed by the construction of the smt. Enriched kmers are extracted and initial models are created. (C) Optimization occurs by refining the seeds using the fast-em algorithm