Fig. 2

Example of the smt functionality. a demonstrates the extraction of overlapping kmers from the dna sequence ACGTACGAT, where each kmer is represented by a unique color, facilitating the visualization of the overlap. b Illustrates the subsequent addition of the kmers to the smt, with the colored cells representing the individual fragments. The columns labeled with @ indicate the addresses of each kmer in the original sequence, while the columns marked with \(\#\) display the frequency. Fully colored lines denote the totalization nodes, where the sums of the frequencies and the compilation of the addresses are calculated. Circles inside cells denote that they have been visited more than once