biomapp::chip: large-scale motif analysis

BMC Bioinformatics

Table 1 Number of peak regions extracted from various experiments available in the jaspar 2022 database

	type	min	max	avg
1	chip-seq	22	322803	17538.78
2	cap-selex	206	22850	9878.26
3	ht-selex	55	91919	9856.47
4	na	84	105198	8801.62
5	ncap-selex	2249	13498	6792.00
6	pbm	98	100001	4424.22
7	compiled	6	28379	3661.81
8	dap-seq	22	19758	1222.74
9	smile-seq	998	1001	999.97
10	chip-exo	48	1000	568.80
11	selex	9	1001	561.11
12	chip-chip	71	4737	475.80
13	selex-seq	384	384	384.00
14	Universal protein binding microarray	99	101	100.00
15	pbm, csa and/or dip-chip	8	102	99.12
16	emsa	29	100	64.50
17	Bacterial 1-hybrid	13	60	23.13
18	DNaseI footprinting	10	41	16.33

It is clearly noted that the ChIP-seq protocol is responsible for generating the most significant volume of data

ISSN: 1471-2105